Heatmaps of pathway predictions in icbp breast cancer cell line based on subtypes
Creating heatmaps
## Warning: package 'psych' was built under R version 3.1.2
## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced
## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced
## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful
## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in log((1 + rho)/(1 - rho)): NaNs produced## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cor(x, use = "pairwise", method = method): the standard
## deviation is zero## Warning in cov2cor(rho): diag(.) had 0 or NA entries; non-finite result is
## doubtful
Now, trying to see patterns across all the subtypes in ICBP breast cancer cell lines 
This analysis was run on Mon Mar 16 09:33:28 2015